List of Estonian football clubs in UEFA Europa Conference League
| Club | Land | Count of part. | M | W | D | L | GF | GA | GD |
|---|---|---|---|---|---|---|---|---|---|
| Flora Tallinn | |
1 time 
2021-2022 |
8 | 3 | 2 | 3 | 10 | 10 | ±0 |
| FC Levadia II Tallinn
(also known as FC Levadia Tallinn) |
|
1 time
2021-2022 |
4 | 1 | 2 | 1 | 7 | 6 | +1 |
| Paide Linnameeskond | |
1 time
2021-2022 |
2 | 0 | 0 | 2 | 1 | 4 | -3 |
| Summary: | 3 times | 14 | 4 | 4 | 6 | 18 | 20 | -2 | |
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