List of Estonian football clubs in UEFA Cup Winners' Cup
| Club | Land | Count of part. | M | W | D | L | GF | GA | GD |
|---|---|---|---|---|---|---|---|---|---|
| FC Lantana Tallinn | |
2 times 
1998-1999, 1995-1996 |
4 | 0 | 1 | 3 | 0 | 9 | -9 |
| Sadam Tallinn | |
2 times
1997-1998, 1996-1997 |
4 | 1 | 1 | 2 | 4 | 7 | -3 |
| Norma Tallinn | |
1 time
1994-1995 |
2 | 0 | 0 | 2 | 1 | 14 | -13 |
| FC Nikol Tallinn | |
1 time
1993-1994 |
2 | 0 | 0 | 2 | 1 | 8 | -7 |
| Summary: | 6 times | 12 | 1 | 2 | 9 | 6 | 38 | -32 | |
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