Lithuanian A Lyga 1998/1999: final table of First division
| # | Club | M | W | D | L | Goal | Pts | GD | Result | |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Zalgiris Vilnius | 23 | 18 | 5 | 0 | 68 - 8 | 59 | +60 |   Champion (Champions League) | |
| 2 | Kareda Siauliai | 23 | 18 | 4 | 1 | 67 - 11 | 58 | +56 | UEFA Cup | |
| 3 | FBK Kaunas | 23 | 18 | 3 | 2 | 57 - 14 | 57 | +43 | UEFA Cup | |
| 4 | Ekranas Panevezys | 23 | 12 | 5 | 6 | 45 - 20 | 41 | +25 | Intertoto Cup | |
| 5 | FK Inkaras Kaunas | 23 | 11 | 4 | 8 | 34 - 27 | 37 | +7 | ||
| 6 | Atlantas Klaipeda | 23 | 8 | 4 | 11 | 34 - 33 | 28 | +1 | ||
| 7 | Banga Gargzdai | 23 | 7 | 5 | 11 | 18 - 30 | 26 | -12 | ||
| 8 | Nevezis-Fostra | 23 | 7 | 4 | 12 | 17 - 36 | 25 | -19 | ||
| 9 | Dainava Alytas | 23 | 8 | 1 | 14 | 24 - 53 | 25 | -29 | ||
| 10 | Zalgiris-2 | 23 | 6 | 3 | 14 | 25 - 60 | 21 | -35 |  Relegated | |
| 11 | Jegeriai Kaunas | 23 | 6 | 2 | 15 | 22 - 48 | 20 | -26 | Relegated | |
| 12 | Lokomotyvas Vilnius | 23 | 4 | 0 | 19 | 12 - 47 | 12 | -35 | Relegation Playoff | |
| 13 | Mastis | 12 | 1 | 0 | 11 | 4 - 40 | 3 | -36 | Withdrew | |
| Pts = Points M = Matches played; W = Matches won; D = Matches drawn; L = Matches lost; GD = Goal difference; | ||||||||||
Notes:
- Champion
 - national cup holder
- participation in European competition
 - promoted
- relegated
|
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1997/1998
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